Publications & Achievements 研究成果

34 papers published as first or corresponding author in top journals, with over 6,000 citations. 以第一和通讯作者在顶级期刊发表论文34篇，他引6000余次

* denotes corresponding author; # or † denotes co-first author. * 代表通讯作者；# 或 † 代表共同第一作者。

2025
LGRPv2: A high-value platform for the advancement of Fabaceae genomics.
Zijian Yu†, Tianyu Lei†, Xin Yi†, Ya’nan Hao†, Shengdan Wu†, Li Wang, Yuxian Li, Lan Zhang, Yuxin Pan, Zejia Xiao, Jiahui Qu, Shiyu Li, Yidan Wang, Lixia Gou*, Yuannian Jiao* and Jinpeng Wang*.
Plant Biotechnology Journal
2025, 23(9):4057-4075. SCI 一区 TOP, IF: 10.5
Evolutionary history of magnoliid genomes and benzylisoquinoline alkaloid biosynthesis.
Yiheng Hu#, Jinpeng Wang#, Lumei Liu#, Xin Yi#, Xin Wang#, Jianyu Wang, Ya’nan Hao, Liuyu Qin, Kunpeng Li, Yishan Feng, Zhongshuai Zhang, Hanying Wu, Yuannian Jiao*.
Nature Communications
2025, 16(1):4039. SCI 一区 TOP, IF: 14.7
OGRP: a comprehensive bioinformatics platform for the efficient empowerment of Oleaceae genomics research.
Zijian Yu#, Yu Li#, Tengfei Song#, Lixia Gou#, Jiaqi Wang, Yue Ding, Zejia Xiao, Jingyue Qin, Hui Jiang, Yan Zhang, Yishan Feng, Xiangming Kong, Shoutong Bao, Shouliang Yin*, Tianyu Lei* and Jinpeng Wang*.
Horticultural Plant Journal
2025, 11(3): 1308-1325. SCI 一区 TOP, IF: 5.7
2024
Allopolyploidization events and immense paleogenome reshuffling underlying the diversification of plants and secondary metabolites in Oleaceae.
Jiaqi Wang#, Yue Ding#, Yinfeng Li#, Xintong Gao#, Xiangming Kong, Feng Long, Yishan Feng, Yan Zhang, Yu Li, Zijian Yu, Tianyu Lei, Li Wang*, Xiu‐Qing Li*, and Jinpeng Wang*.
Journal of Systematics and Evolution
2024, 63(2): 208-228. SCI 一区, IF: 3.4
Allotetraploidization event of Coptis chinensis shared by all Ranunculales.
Zhang Yan#, Weina Ge#, Jia Teng#, Yanmei Yang#, Jianyu Wang#, Zijian Yu, Jiaqi Wang, Qimeng Xiao, Junxin Zhao, Shaoqi Shen, Yishan Feng, Shoutong Bao, Yu Li, Yuxian Li, Tianyu Lei, Yuxin Pan*, Lan Zhang*, and Jinpeng Wang*.
Horticultural Plant Journal
2024, 10(1): 288-303. SCI 一区 TOP, IF: 5.7
A likely paleo-autotetraploidization event shaped the high conservation of Nyssaceae genome.
Yishan Feng#, Zhenyi Wang#, Qimeng Xiao#, Jia Teng, Jianyu Wang, Zijian Yu, Jiaqi Wang, Qiang Xu, Yan Zhang, Shaoqi Shen, Shoutong Bao, Yu Li, Zimo Yan, Yue Ding, Zihan Liu, Yuxian Li, Tianyu Lei, Min Yuan*, Xiu Qing Li*, Jinpeng Wang*.
Horticultural Plant Journal
2024, 10(3):911-930. SCI 一区 TOP, IF: 5.7
2023
Two-step model of paleohexaploidy, ancestral genome reshuffling and plasticity of heat shock response in Asteraceae.
Xiangming Kong#, Yan Zhang#, Ziying Wang#, Shoutong Bao#, Yishan Feng, Jiaqi Wang, Zijian Yu, Feng Long, Zejia Xiao, Yanan Hao, Xintong Gao, Yinfeng Li, Yue Ding, Jianyu Wang, Tianyu Lei*, Chuanyuan Xu*, and Jinpeng Wang*.
Horticulture Research
2023, 10(6): uhad073. SCI 一区 TOP, IF: 8.7
A likely autotetraploidization event shaped the Chinese mahogany (Toona sinensis) genome.
Jianyu Wang#, Ziyi Yang#, Tianyu Lei#, Yan Zhang, Qimeng Xiao, Zijian Yu, Jiaqi Zhang, Sangrong Sun, Qiang Xu, Shaoqi Shen, Zimo Yan, Mengnan Fang, Yue Ding, Zihan Liu, Qianwen Zhu, Ke Ren, Yuxin Pan*, Haibin Liu*, Jinpeng Wang*.
Horticultural Plant Journal
2023, 9(2): 306-320. SCI 一区 TOP, IF: 5.7
2022
A common whole-genome paleotetraploidization in Cucurbitales.
Jiaqi Wang#, Min Yuan#, Yishan Feng#, Yan Zhang#, Shoutong Bao, Yanan Hao, Yue Ding, Xintong Gao, Zijian Yu, Qiang Xu, Junxin Zhao, Qianwen Zhu, Ping Wang, Chunyang Wu, Jianyu Wang, Yuxian Li, Chuanyuan Xu, Jinpeng Wang*.
Plant Physiology
2022, 190(4): 2430–2448. SCI 一区 TOP, IF: 7.4
Genome sequence and population genomics provide insights into chromosomal evolution and phytochemical innovation of Hippophae rhamnoides.
Liyang Yu#, Songfeng Diao#, Guoyun Zhang#, Jigao Yu, Tong Zhang, Hongmei Luo, Aiguo Duan, Jinpeng Wang*, Caiyun He*, Jianguo Zhang*.
Plant Biotechnology Journal
2022, 20(7): 1257-1273. SCI 一区 TOP, IF: 13.8
Paleopolyploidies and Genomic Fractionation in Major Eudicot Clades.
Jia Teng#, Jianyu Wang#, Lan Zhang#, Chendan Wei, Shaoqi Shen, Qimeng Xiao, Yuanshuai Yue, Yanan Hao, Weina Ge*, Jinpeng Wang*.
Frontiers in Plant Science
2022, 13: 883140-883155. SCI 二区 TOP, IF: 5.6
Conversion between duplicated genes generated by polyploidization contributes to the divergence of poplar and willow.
Jianyu Wang#, Lan Zhang#, Jiaqi Wang#, Yanan Hao, Qimeng Xiao, Jia Teng, Shaoqi Shen, Yan Zhang, Yishan Feng, Shoutong Bao, Yu Li, Zimo Yan, Chendan Wei, Li Wang*, Jinpeng Wang*.
BMC Plant Biology
2022, 22(1): 298-313. SCI 二区 TOP, IF: 5.6
Two independent allohexaploidizations and genomic fractionation in Solanales.
Yan Zhang#, Lan Zhang#, Qimeng Xiao#, Chunyang Wu#, Jiaqi Zhang, Qiang Xu, Zijian Yu, Shoutong Bao, Jianyu Wang, Yu Li, Li Wang* and Jinpeng Wang*.
Frontiers in Plant Science
2022, 13: 1001402-1001419. SCI 二区 TOP, IF: 5.6
Genome-Wide Analysis of the NAC Family Associated with Two Paleohexaploidization Events in the Tomato.
Jiale Yuan#, Ying Liu#, Zhenyi Wang, Tianyu Lei, Yanfang Hu, Lan Zhang, Min Yuan, Jinpeng Wang*, Yuxian Li*.
Life
2022, 12(8): 1236-1253. SCI 四区, IF: 3.2
2021
Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome.
Liuyu Qin#, Yiheng Hu#, Jinpeng Wang#, Xiaoliang Wang#, Ran Zhao#, Hongyan Shan, Kunpeng Li, Peng Xu, Hanying Wu, Xueqing Yan, Lumei Liu, Xin Yi, Stefan Wanke, John E. Bowers, James H. Leebens-Mack, Claude W. dePamphilis, Pamela S. Soltis, Douglas E. Soltis, Hongzhi Kong and Yuannian Jiao*.
Nature Plants
2021, 7(9): 1239-1253. SCI 一区 TOP, IF: 18
Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement.
Vanika Garg#, Olga Dudchenko#, Jinpeng Wang#, Aamir W. Khan, Saurabh Gupta, Parwinder Kaur, Kai Han, Rachit K. Saxena, Sandip M. Kale, Melanie Pham, Jigao Yu, Annapurna Chitikineni, Zhikang Zhang, Guangyi Fan, Christopher Lui, Vinodkumar Valluri, Fanbo Meng, Aditi Bhandari, Xiaochuan Liu, Tao Yang, Hua Chen, Babu Valliyodan, Manish Roorkiwal, Chengcheng Shi, Hong Bin Yang, Neva C. Durand, Manish K. Pandey, Guowei Li, Rutwik Barmukh, Xingjun Wang, Xiaoping Chen, Hon-Ming Lam, Huifang Jiang, Xuxiao Zong, Xuanqiang Liang, Xin Liu, Boshou Liao, Baozhu Guo, Scott Jackson, Henry T. Nguyen, Weijian Zhuang, Wan Shubo*, Xiyin Wang*, Erez Lieberman Aiden*, Jeffrey L. Bennetzen*, Rajeev K. Varshney*.
Journal of Advanced Research
2021, 42: 315-329. SCI 一区 TOP, IF: 10.479
Conversion between 100-million-year-old duplicated genes contributes to rice subspecies divergence.
Chendan Wei#, Zhenyi Wang#, Jianyu Wang#, Jia Teng, Shaoqi Shen, Qimeng Xiao, Shoutong Bao, Yishan Feng, Yan Zhang, Yuxian Li, Sangrong Sun, Yuanshuai Yue, Chunyang Wu, Yanli Wang, Tianning Zhou, Wenbo Xu, Jigao Yu, Li Wang* and Jinpeng Wang*.
BMC Genomics
2021, 22: 460. SCI 二区 TOP, IF: 5.3
Illegitimate Recombination between Duplicated Genes Generated from Recursive Polyploidizations Accelerated the Divergence of the Genus Arachis.
Shaoqi Shen#, Yuxian Li#, Jianyu Wang, Chendan Wei, Zhenyi Wang, Weina Ge, Min Yuan, Lan Zhang, Li Wang, Sangrong Sun, Jia Teng, Qimeng Xiao, Shoutong Bao, Yishan Feng, Yan Zhang, Jiaqi Wang, Yanan Hao, Tianyu Lei* and Jinpeng Wang*.
Genes
2021, 12(12): 1944. SCI 三区, IF: 3.5
2020
Paleo-polyploidizations in lycophytes.
Jinpeng Wang#, Jigao Yu, Pengchuan Sun, Chao Li, Xiaoming Song, Tianyu Lei, Yuxian Li, Jiaqing Yuan, Sangrong Sun, Hongling Ding, Xueqian Duan, Shaoqi Shen, Yanshuang Shen, Jing Li, Fanbo Meng, Yangqin Xie, Jianyu Wang, Yue Hou, Jin Zhang, Xianchun Zhang, Xiuqing Li, Andrew H. Paterson, and Xiyin Wang*.
Genomics, Proteomics & Bioinformatics
2020, 18 (3): 333-340. SCI 一区 TOP, IF: 9.5
Sequential paleotetraploidization shaped the carrot genome.
Jinpeng Wang#, Jigao Yu#, Yuxian Li, Chendan Wei, He Guo, Ying Liu, Jin Zhang, Xiuqing Li and Xiyin Wang*.
BMC Plant Biology
2020, 20(1): 52. SCI 二区 TOP, IF: 5.3
Cotton Duplicated Genes Produced by Polyploidy Show Significantly Elevated and Unbalanced Evolutionary Rates, Overwhelmingly Perturbing Gene Tree Topology.
Fanbo Meng#, Yuxin Pan#, Jinpeng Wang#, Jigao Yu, Chao Liu, Zhikang Zhang, Chendan Wei, He Guo and Xiyin Wang*.
Frontiers in Genetics
2020, 11: 239-247. SCI 三区, IF: 3.7
2019
Deciphering the high-quality genome sequence of coriander that causes controversial feelings.
Xiaoming Song#, Jinpeng Wang#, Nan Li, Jigao Yu, Fanbo Meng, Chendan Wei, Chao Liu, Wei Chen, Fulei Nie, Zhikang Zhang, Ke Gong, Xinyu Li, Jingjing Hu, Qihang Yang, Yuxian Li, Chunjin Li, Shuyan Feng, He Guo, Jiaqing Yuan, Qiaoying Pei, Tong Yu, Xi Kang, Wei Zhao, Tianyu Lei, Pengchuan Sun, Li Wang, Weina Ge, Di Guo, Xueqian Duan, Shaoqi Shen, Chunlin Cui, Ying Yu, Yangqin Xie, Jin Zhang, Yue Hou, Jianyu Wang, Jinyu Wang, Xiu-Qing Li, Andrew H. Paterson and Xiyin Wang*.
Plant Biotechnology Journal
2019, 18(6):1444-1456. SCI 一区 TOP, IF: 13.8
Recursive paleohexaploidization shapes the durian genome.
Jinpeng Wang#, Jiaqing Yuan#, Jigao Yu#, Fanbo Meng#, Pengchuan Sun, Yuxian Li, Nanshan Yang, Zhenyi Wang, Yuxin Pan, Weina Ge, Li Wang, Jing Li, Chao Liu, Zhiyan Xi, Yuhao Zhao, Sainan Luo, Dongcen Ge, Xiaobo Cui, Guangdong Feng, Ziwei Wang, Lei Ji, Jun Qin, Xiuqing Li, Xiyin Wang* and Zhiyan Xi.
Plant Physiology
2019, 179(1): 209-219. SCI 一区 TOP, IF: 7.4
Alignment of Rutaceae Genomes Reveals Lower Genome Fractionation Level Than Eudicot Genomes Affected by Extra Polyploidization.
Jiaqing Yuan#, Jinpeng Wang#, Jigao Yu, Fanbo Meng, Yuhao Zhao, Jing Li, Pengchuan Sun, Sangrong Sun, Zhikang Zhang, Chao Liu, Chendan Wei, He Guo, Xinyu Li, Xueqian Duan, Shaoqi Shen, Yangqin Xie, Yue Hou, Jin Zhang, Tariq Shehzad* and Xiyin Wang*.
Frontiers in Plant Science
2019, 10:986-999. SCI 二区 TOP, IF: 5.6
Reconstruction of evolutionary trajectories of chromosomes unraveled independent genomic repatterning between Triticeae and Brachypodium.
Zhenyi Wang#, Jinpeng Wang#, Yuxin Pan#, Tianyu Lei#, Weina Ge, Li Wang, Lan Zhang, Yuxian Li, Kanglu Zhao, Tao Liu, Xiaoming Song, Jiaqi Zhang, Jigao Yu, Jingjing Hu and Xiyin Wang*.
BMC Genomics
2019, 20(1):180-190. SCI 二区 TOP, IF: 4.4
Polyploidy index and its implications for the evolution of polyploids.
Jinpeng Wang#, Jun Qin#, Pengchuan Sun, Xuelian Ma, Jigao Yu, Yuxian Li, Sangrong Sun, Tianyu Lei, Fanbo Meng, Chendan Wei, Xinyu Li, He Guo, Xiaojian Liu, Ruiyan Xia, Ruyue Zhang, Lei Ji, Li Wang, Weina Ge, Zhenyi Wang, Xiaoming Song, Lan Zhang, Di Guo, Yuxin Pan, Jinyu Wang, Shoutong Bao, Shan Jiang, Yishan Feng, Xueping Li, Andrew H. Paterson, Xiyin Wang*.
Frontiers in Genetics
2019, 10:807. SCI 三区, IF: 3.7
2018
An overlooked paleo-tetraploidization in Cucurbitaceae.
Jinpeng Wang#, Pengchuan Sun, Yuxian Li, Yinzhe Liu, Nanshan Yang, Jigao Yu, Xuelian Ma, Sangrong Sun, Ruiyan Xia, Xiaojian Liu, Dongcen Ge, Sainan Luo, Yinmeng Liu, Youting Kong, Xiaobo Cui, Tianyu Lei, Li Wang, Zhenyi Wang, Weina Ge, Lan Zhang, Xiaoming Song, Min Yuan, Di Guo, Dianchuan Jin, Wei Chen, Yuxin Pan, Tao Liu, Guixian Yang, Yue Xiao, Jinshuai Sun, Cong Zhang, Zhibo Li, Haiqing Xu, Xueqian Duan, Shaoqi Shen, Zhonghua Zhang, Sanwen Huang, and Xiyin Wang*.
Molecular Biology and Evolution
2018, 35(1): 16-26. SCI 一区 TOP, IF: 10.7
Two likely auto-tetraploidization events shaped kiwifruit genome and contributed to establishment of the Actinidiaceae family.
Jinpeng Wang#, Jigao Yu#, Jing Li#, Pengchuan Sun#, Li Wang#, Jiaqing Yuan, Fanbo Meng, Sangrong Sun, Yuxian Li, Tianyu Lei, Yuxin Pan, Weina Ge, Zhenyi Wang, Lan Zhang, Xiao-Ming Song, Chao Liu, Xueqian Duan, Shaoqi Shen, Yangqin Xie, Yue Hou, Jin Zhang, Jianyu Wang, Xiyin Wang*.
iScience
2018, 7: 230-240. SCI 二区 (CELL子刊), IF: 5.8
Genomic, expressional, protein-protein interactional analysis of Trihelix transcription factor genes in Setaria italia and inference of their evolutionary trajectory.
Zhenyi Wang#, Kanglu Zhao#, Yuxin Pan#, Jinpeng Wang#, Xiaoming Song#, Weina Ge#, Min Yuan, Tianyu Lei, Li Wang, Lan Zhang, Yuxian Li, Tao Liu, Wei Chen, Wenjing Meng, Changkai Sun, Xiaobo Cui, Yun Bai and Xiyin Wang*.
BMC Genomics
2018, 19(1):665-677. SCI 二区 TOP, IF: 4.4
2017
Hierarchically aligning 10 legume genomes establishes a family-level genomics platform.
Jinpeng Wang#, Pengchuan Sun, Yuxian Li, Yinzhe Liu, Jigao Yu, Xuelian Ma, Sangrong Sun, Nanshan Yang, Ruiyan Xia, Tianyu Lei, Xiaojian Liu, Beibei Jiao, Yue Xing, Weina Ge, Li Wang, Zhenyi Wang, Xiaoming Song, Min Yuan, Di Guo, Lan Zhang, Jiaqi Zhang, Dianchuan Jin, Wei Chen, Yuxin Pan, Tao Liu, Ling Jin, Jinshuai Sun, Jiaxiang Yu, Rui Cheng, Xueqian Duan, Shaoqi Shen, Jun Qin, Meng-chen Zhang, Andrew H. Paterson, and Xiyin Wang*.
Plant Physiology
2017, 174 (1): 284-300. SCI 一区 TOP, IF: 7.4
Two Highly Similar Poplar Paleo-subgenomes Suggest an Autotetraploid Ancestor of Salicaceae Plants.
Yinzhe Liu#, Jinpeng Wang#, Weina Ge, Zhenyi Wang, Yuxian Li, Nanshan Yang, Sangrong Sun, Liwei Zhang, and Xiyin Wang*.
Frontiers in Plant Science
2017, 8: 571. SCI 二区 TOP, IF: 5.6
Alignment of Common Wheat and Other Grass Genomes Establishes a Comparative Genomics Research Platform.
Sangrong Sun#, Jinpeng Wang#, Jigao Yu, Fanbo Meng, Ruiyan Xia, Li Wang, Zhenyi Wang, Weina Ge, Xiaojian Liu, Yuxian Li, Yinzhe Liu, Nanshan Yang and Xiyin Wang*.
Frontiers in Plant Science
2017, 8: 1480-1490. SCI 二区 TOP, IF: 5.6
2016
Comparative genomics analysis of rice and pineapple contributes to understand the chromosome number reduction and genomic changes in grasses.
Jinpeng Wang#, Jiaxiang Yu#, Pengchuan Sun, Yuxian Li, Ruiyan Xia, Yinzhe Liu, Xuelian Ma, Jigao Yu, Nanshan Yang, Tianyu Lei, Zhenyi Wang, Li Wang, Weina Ge, Xiaoming Song, Xiaojian Liu, Sangrong Sun, Tao Liu, Dianchuan Jin, Yuxin Pan*, Xiyin Wang*.
Frontiers in Genetics
2016, 7:174. SCI 三区, IF: 3.7
  • Wang J, et al. A crop high-yield gene prediction algorithm and system based on multi-omics data. Invention Patent (Granted: ZL20231xxxxxxx.X) 王金朋, 等. 一种基于多组学数据的作物高产基因预测算法及系统. 发明专利 (授权号: ZL20231xxxxxxx.X)
  • Wang J, et al. Plant single-cell multi-omics data analysis pipeline software V1.0. Software Copyright (No. 2023SRxxxxxx) 王金朋, 等. 植物单细胞多组学数据分析流程软件 V1.0. 计算机软件著作权 (登记号: 2023SRxxxxxx)
  • Wang J (Editor-in-Chief). Introduction to Bioinformatics. Publisher Name, 202x. 王金朋 (主编). 《生物信息学概论》. 某某出版社, 202x年.